Orf type:5prime_partial
WitrynaTransDecoder is a tool we built to identify likely coding regions within transcript sequences. It identifies long open reading frames (ORFs) within transcripts and scores them according to their sequence composition. Those ORFs that encode sequences with compositional properties (codon frequencies) consistent with coding transcripts are ... WitrynaORF Type: 5prime_partial: Annotations of Ll_transcript_298885. Blastp: Protein XRI1 from Arabidopsis with 41.75% of identity: Blastx: Protein XRI1 from Arabidopsis with 40.45% of identity: Eggnog: NA(ENOG410YGP1) Kegg: Link to kegg annotations : CantataDB-Mirbase-Ncbi protein:
Orf type:5prime_partial
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http://luluseqdb.umk.pl/basic/web/index.php?r=protein-coding%2Fview&id=105095 http://luluseqdb.umk.pl/basic/web/index.php?r=protein-coding%2Fview&id=77414
WitrynaORF Type: 5prime_partial: Annotations of Ll_transcript_189881. Blastp-Blastx-Eggnog-Kegg-CantataDB-Mirbase-Ncbi protein: Link to NCBI protein (XP_015965091.1) Pfam … Witryna7 paź 2024 · When I look at the results of the same transcript from the abovementioned files I see different ORFs. As an example, I randomly copy the ORF results of the same transcript from two files below.
http://luluseqdb.umk.pl/basic/web/index.php?r=protein-coding%2Fview&id=221098
http://luluseqdb.umk.pl/basic/web/index.php?r=protein-coding%2Fview&id=238864
WitrynaSimple BioJS example. Download information about this protein coding transcript Download CDS sequence Download peptide sequence top rated help with non profitWitryna14 kwi 2024 · The Km R cassette was amplified from the pKD4 plasmid with primers Km expI F and Km expI R, whose 5′-ends were complementary to Pba DNA regions adjacent to expI ORF. Two obtained PCR fragments (corresponding to pGEM plasmid with ~1000 bp regions up- and downstream of expI ORF and to Km R cassette) were joined by … top rated hematologists near meWitrynaAfter TransDecoder.Predict I noticed that for some transcripts I have more than one ORF prediction, such as in the below example: Transcript.p2 ORF type:complete len:142 … top rated helmet with cameraWitryna17 lut 2024 · 这个文件中:header行包含了蛋白的ID信息、原始转录本ID信息、type信息、长度、正负链、打分信息、ORF坐标信息. 其中type信息可能会出现: complete: … top rated hemp cream for painhttp://luluseqdb.umk.pl/basic/web/index.php?r=protein-coding%2Fview&id=107537 top rated hemp based proteinhttp://luluseqdb.umk.pl/basic/web/index.php?r=protein-coding%2Fview&id=172410 top rated helpdesk softwareWitrynaORF Type: 5prime_partial: Annotations of Ll_transcript_382403. Blastp: 60S ribosomal protein L5 from Cucumis with 84.44% of identity: Blastx: 60S ribosomal protein L5 … top rated helmets for 2020